Lisa news

On this page we try to keep track of significant changes in the Lisa system: newly installed software; system upgrades, system crashes and so on.


2014-04-03 R-3.0.3 installed
2014-04-03 32 nodes added
2014-04-03 Stopos-0.93 installed
2014-03-27 Cleaning the system
2014-03-11 NBO 6 installed
2014-03-11 Julia 0.2.0 installed
2014-03-10 R-3.0.2 installed
2014-03-06 java-7u51 installed
2014-03-04 ParaView 4.1.0 installed
2014-01-21 SURFsara app released
2014-01-20 MATLAB R2013b installed
2014-01-09 R-3.0.1 installed
2013-12-13 Dropbox installed
2013-12-12 Disparm removed, use stopos instead
2013-12-10 Use lisa.surfsara.nl (not lisa.sara.nl)
2013-11-25 Beast-1.8.0 installed
2013-10-24 Module for gfortran-4.4 created
2013-10-24 Upgrade to Wheezy
2013-10-23 R version 2.15.3, specially optimized is installed
2013-10-21 ox-7.00 default
2013-10-14 JAGS 3.4.0 installed
2013-10-09 Cleaning the module environment continues
2013-09-27 Intel Fortran, C, C++ 13.1.3 compilers and MKL 11.0.5 installed. New defaults on Monday, 30.09.2013, morning
2013-09-27 HyPhy installed
2013-09-20 Qt4 and Qt5 installed
2013-09-16 openmpi-1.6.5 installed
2013-09-02 FlexBar 2.4 installed
2013-08-23 Bowtie 1.0.0, Bowtie2 2.1.0, SamTools 0.1.19, TopHat 2.0.9 and CuffLinks 2.1.1 installed
2013-08-15 Random Jungle 2.0.0 installed
2013-08-12 Lumerical FDTD 8.6.3 installed
2013-07-26 GROMACS 4.6.3 and PLUMED GROMACS 4.6.2 installed
2013-07-26 FreeSurfer 5.3.0 installed
2013-07-16 GCTA-1.13 installed
2013-07-15 PVFS2-2.8.7 installed
2013-07-11 PETSc-3.4.2 installed
2013-06-24 Saranodes-1.2 installed
2013-06-20 Cleaning of the modules finished
2013-06-13 GAUSSIAN G09 version D.01 installed and C.01 removed
2013-06-12 GAMESS-US version r3 May 2013 is installed
2013-06-11 QIIME 1.7.0 is installed
2013-06-11 DALTON 2011 is installed
2013-06-05 snptest 2.4.1 is installed
2013-06-05 ADF 2013.01 is installed
2013-05-28 LDAK 2.0 installed
2013-05-24 Orca 2.9.1 installed
2013-05-24 Gamess-us May2012 default
2013-05-06 ADF 2012.01 is installed
2013-05-02 GPU cluster: end of service
2013-04-22 openmpi-1.6.4 installed UPDATE
2013-04-16 dmtcp-1.2.7 installed
2013-04-05 mdxx-1.1.1-p2 and mdxx-1.2.2 installed
2013-03-26 vcftools 0.1.10 installed
2013-03-25 Plumed for Gromacs installed
2013-03-21 Cleaning the modules. UPDATE !!
2013-03-04 NWchem 6.2b installed
2013-03-04 FFTW 3.3.3 installed
2013-02-18 Stopos-0.91 Manage your jobs, more robust than Disparm, has been installed
2013-02-12 Jag-1.0 a free, open source tool for gene-set analysis using GWAS datasets, has been installed
2013-02-08 Latest netCDF 4.2.1, HDF5 1.8.10, UDunits 2.1.24 and NCview 2.1.2 installed
2013-02-05 Latest MUMPS 4.10.0 installed
2013-02-04 Intel Fortran, C, C++ 13.1 compilers and MKL 11.0.2 installed. New defaults.
2013-01-26 Power failure: system crashed
2013-01-24 FSL-5.02 installed
2013-01-14 Gemma-0.93 installed
2013-01-10 Eigensoft-4.2 installed
2013-01-07 Java 7 Update 10 installed
2012-12-20 Plink-1.07 re-installed
2012-12-14 Mach2dat-1.0.19 installed
2012-12-07 GCTA-1.04 installed
2012-12-05 CP2K 2.4d #2 updated with Hartree-Fock exchange energy module
2012-12-05 OpenMPI 1.6.3 installed
2012-12-03 From OpenMPI-1.4 to OpenMPI-1.6
2012-11-26 CP2K 2.4d #2 installed
2012-11-26 MATLAB R2012B made default
2012-11-23 Intel Fortran, C, C++ 13.0.1 compilers and MKL 11.0.1 installed. Updating the default versions.
2012-11-22 Python 3.3.0 installed
2012-11-22 Python 2.7.3 installed
2012-11-16 ExaML installed
2012-11-16 RAxML version 7.4.0 installed
2012-11-14 MEGA2 version 4.5.6 installed
2012-11-09 Lapack and Lapacke version 3.4.2 installed
2012-11-08 R version 2.15.2, specially optimized is installed
2012-10-26 Access Control Lists (ACLs) available
2012-10-26 Installation Gromacs 4.5.5
2012-10-15 Upgrade OpenMPI to version 1.6.2
2012-10-08 Cooling problems
2012-09-20 Gaussian 09-C01 installed
2012-08-30 Fileserver move
2012-08-22 FreeSurfer 5.1.0 installed
2012-08-21 SHAPEIT version v1.ESHG installed
2012-08-21 IMPUTE version 2.2.2 installed
2012-08-17 CGAL version 4.0.2 installed
2012-08-17 R version 2.15.1 installed
2012-08-17 CHARM++ 6.4.0 installed
2012-08-17 GCC 4.7.1 installed
2012-08-16 Batch resources available in your job
2012-08-14 Major upgrade of the system
2012-08-09 NWchem 6.1.1 installed
2012-08-06 openmpi nightly snapshot with java support
2012-08-06 saranodes-1.1 installed
2012-08-02 disparm-1.1 installed
2012-07-29 modcom-1.0 installed
2012-07-26 GCTA-1.01 installed
2012-07-20 Petsc 3.3-p2 and hypre installed
2012-07-17 PLINK/Seq and VCFtools installed
2012-07-16 Upgrade OpenMPI to version 1.6
2012-07-03 Upgrade kernel to version 3.4
2012-07-02 Upgrade to ifort-12.1.5 icc-12.1.4 mkl-10.3.11
2012-06-20 Upgrade to BEAST-1.6.2
2012-05-04 Upgrade to CUDA-4.2.9
2012-05-01 pbs_joblogin: login on a node where your job is running
2012-05-01 pbs_jobmonitor: monitor the node where your job is running
2012-03-30 mach-1.0.18 installed
2012-03-12 scalapack-2.0.1 installed
2012-03-12 lapack-3.4.0 installed
2012-03-12 cblas-2011-04-20 installed
2012-03-12 blas-2011-04-19 installed
2012-03-09 valgrind-3.7.0 installed
2012-02-21 python-2.7.2 numpy-1.6.1 scipy-0.10.1rc2 pycogent-1.5.1 pysparse-1.1.1 installed
2012-02-20 petsc-3.2-p6 installed
2012-02-20 openmpi-1.4.5 installed
2012-02-20 disparm: a tool to manage many jobs
2012-02-09 upgrade google performance tools to 2.0
2012-01-18 upgrading to cuda-4.1.21: ready
2011-12-20 fftw-3.3.1-beta1 with mpi interface installed
2011-11-14 xpra facility to run x-window applications in the background installed
2011-10-24 openmpi 1.4.4 installed
2011-10-11 samtools 0.1.18 installed
2011-10-11 siesta and transiesta 3.1 installed
2011-09-13 openmpi version 1.5.4 installed
2011-08-19 haploview 4.2 installed
2011-08-19 paraview 3.10.1 installed
2011-08-09 openbugs 3.2.1 installed
2011-08-08 openfoam 2.0 + swak4foam installed
2011-08-01 turbomole-6.3.1 installed
2011-07-12 netcdf-4.1.2 installed
2011-07-12 penncnv version 28 june 2011 available
2011-07-11 checkpoint/restart of mpi-based applications
2011-07-04 snptest 2.2.0 available
2011-06-24 r version 2.13 available
2011-06-21 cuda 4.0 available
2011-04-15 shorah 0.5.1 available
2011-04-15 pysam 0.4.1 available
2011-04-15 emboss 6.3.1 available
2011-04-04 cleaning up modules
2011-04-01 r version 2.12.2 available
2011-03-07 new level debian linux: squeeze updated: 2011-03-31
2010-12-20 openmpi version 1.5.3 available
2011-02-24 budget correction
2011-02-18 cuda 3.2 installation: ready
2010-12-20 openmpi version 1.5.1 available
2010-12-01 system maintenance 2010-12-06, updated 2010-12-07
2010-11-26 checkpoint/restart using dmtcp
2010-11-01 new accounting formula
2010-11-01 how to use a mix of 8- and 12-core nodes: the saranodes module
2010-11-01 gromacs 4.5.1 available
2010-10-15 openmpi version 1.5 available
2010-10-14 openmpi version 1.4.3 available
2010-09-20 matlab r2010b and mcr v7.14 installed
2010-09-13 update cuda to version 3.1
2010-09-02 replacement of part of lisa successful
2010-06-14 job number 4.000.000
2010-06-02 job number 3.000.000
2010-04-23 installation of cuda-3.0
2010-03-09 open mpi 1.4.1 default
2010-01-28 no cores2 nodes anymore
2009-10-15 gpu nodes installed
2009-09-25 replacing dual core system with octo core systems
2009-06-29 removing last 32-bit parts of lisa
2009-04-29 lisa default 64 bit on may 12
2009-04-27 openmpi-1.3.2 available
2009-04-16 partial upgrade to 64 bit operating system
2009-03-20 job number 2.000.000
2009-01-29 upgrade: hardware and operating system
2008-12-09 new module structure
2008-11-26 new regulations in the accounting system
2008-10-02 new mkl library and intel compilers
2008-04-08 Changing of user-id's